Colombia has been submerged in decades of armed conflict, yet until recently, the systematic documentation of violence was not a priority for the Colombian government. This has resulted in a lack of publicly available conflict information and, consequently, a lack of historical accounts. This study contributes to Colombia's historical memory by utilizing GPT, a large language model (LLM), to read and answer questions about over 200,000 violence-related newspaper articles in Spanish. We use the resulting dataset to conduct both descriptive analysis and a study of the relationship between violence and the eradication of coca crops, offering an example of policy analyses that such data can support. Our study demonstrates how LLMs have opened new research opportunities by enabling examinations of large text corpora at a previously infeasible depth.

Objectives: With accurate estimates of expected safety results, clinical trials could be better designed and monitored. We evaluated methods for predicting serious adverse event (SAE) results in clinical trials using information only from their registrations prior to the trial. Material and Methods: We analyzed 22,107 two-arm parallel interventional clinical trials from ClinicalTrials.gov with structured summary results. Two prediction models were developed: a classifier predicting whether a greater proportion of participants in an experimental arm would have SAEs (area under the receiver operating characteristic curve; AUC) compared to the control arm, and a regression model to predict the proportion of participants with SAEs in the control arms (root mean squared error; RMSE). A transfer learning approach using pretrained language models (e.g., ClinicalT5, BioBERT) was used for feature extraction, combined with a downstream model for prediction. To maintain semantic representation in long trial texts exceeding localized language model input limits, a sliding window method was developed for embedding extraction. Results: The best model (ClinicalT5+Transformer+MLP) had 77.6% AUC when predicting which trial arm had a higher proportion of SAEs. When predicting SAE proportion in the control arm, the same model achieved RMSE of 18.6%. The sliding window approach consistently outperformed direct comparisons. Across 12 classifiers, the average absolute AUC increase was 2.00%, and absolute RMSE reduction was 1.58% across 12 regressors. Discussion: Summary results data from ClinicalTrials.gov remains underutilized. Predicted results of publicly reported trials provides an opportunity to identify discrepancies between expected and reported safety results.

We introduce an algorithm for identifying interpretable subgroups with elevated treatment effects, given an estimate of individual or conditional average treatment effects (CATE). Subgroups are characterized by "rule sets"--easy-to-understand statements of the form (Condition A AND Condition B) OR (Condition C) --which can capture high-order interactions while retaining interpretability. Our method complements existing approaches for estimating the CATE, which often produce high dimensional and uninterpretable results, by summarizing and extracting critical information from fitted models to aid decision making, policy implementation, and scientific understanding. We propose an objective function that trades-off subgroup size and effect size, and varying the hyperparameter that controls this trade-off results in a "frontier" of Pareto optimal rule sets, none of which dominates the others across all criteria. Valid inference is achievable through sample splitting. We demonstrate the utility and limitations of our method using simulated and empirical examples. In causal inference, average treatment effects (ATE) and average treatment effects on the treated (ATT) are the estimands that garner the most interest. Even if the effect of a treatment is known to be positive on average, it can vary greatly across individuals; some individuals will benefit, but some may experience no effect, and others may even be hurt.

Graphical models are an important tool in exploring relationships between variables in complex, multivariate data. Methods for learning such graphical models are well developed in the case where all variables are either continuous or discrete, including in high-dimensions. However, in many applications data span variables of different types (e.g. continuous, count, binary, ordinal, etc.), whose principled joint analysis is nontrivial. Latent Gaussian copula models, in which all variables are modeled as transformations of underlying jointly Gaussian variables, represent a useful approach. Recent advances have shown how the binary-continuous case can be tackled, but the general mixed variable type regime remains challenging. In this work, we make the simple yet useful observation that classical ideas concerning polychoric and polyserial correlations can be leveraged in a latent Gaussian copula framework. Building on this observation we propose flexible and scalable methodology for data with variables of entirely general mixed type. We study the key properties of the approaches theoretically and empirically, via extensive simulations as well an illustrative application to data from the UK Biobank concerning COVID-19 risk factors.

We compare in this paper several feature selection methods for the Naive Bayes Classifier (NBC) when the data under study are described by a large number of redundant binary indicators. Wrapper approaches guided by the NBC estimation of the classification error probability out-perform filter approaches while retaining a reasonable computational cost.

Detecting early signs of failures (anomalies) in complex systems is one of the main goal of preventive maintenance. It allows in particular to avoid actual failures by (re)scheduling maintenance operations in a way that optimizes maintenance costs. Aircraft engine health monitoring is one representative example of a field in which anomaly detection is crucial. Manufacturers collect large amount of engine related data during flights which are used, among other applications, to detect anomalies. This article introduces and studies a generic methodology that allows one to build automatic early signs of anomaly detection in a way that builds upon human expertise and that remains understandable by human operators who make the final maintenance decision. The main idea of the method is to generate a very large number of binary indicators based on parametric anomaly scores designed by experts, complemented by simple aggregations of those scores. A feature selection method is used to keep only the most discriminant indicators which are used as inputs of a Naive Bayes classifier. This give an interpretable classifier based on interpretable anomaly detectors whose parameters have been optimized indirectly by the selection process. The proposed methodology is evaluated on simulated data designed to reproduce some of the anomaly types observed in real world engines.

Automatic anomaly detection is a major issue in various areas. Beyond mere detection, the identification of the origin of the problem that produced the anomaly is also essential. This paper introduces a general methodology that can assist human operators who aim at classifying monitoring signals. The main idea is to leverage expert knowledge by generating a very large number of indicators. A feature selection method is used to keep only the most discriminant indicators which are used as inputs of a Naive Bayes classifier. The parameters of the classifier have been optimized indirectly by the selection process. Simulated data designed to reproduce some of the anomaly types observed in real world engines.

Abstract-- Automatic anomaly detection is a major issue in various areas. Beyond mere detection, the identification of the source of the problem that produced the anomaly is also essential. This is particularly the case in aircraft engine health monitoring where detecting early signs of failure (anomalies) and helping the engine owner to implement efficiently the adapted maintenance operations (fixing the source of the anomaly) are of crucial importance to reduce the costs attached to unscheduled maintenance. This paper introduces a general methodology that aims at classifying monitoring signals into normal ones and several classes of abnormal ones. The main idea is to leverage expert knowledge by generating a very large number of binary indicators. Each indicator corresponds to a fully parametrized anomaly detector built from parametric anomaly scores designed by experts. A feature selection method is used to keep only the most discriminant indicators which are used at inputs of a Naive Bayes classifier. This give an interpretable classifier based on interpretable anomaly detectors whose parameters have been optimized indirectly by the selection process. The proposed methodology is evaluated on simulated data designed to reproduce some of the anomaly types observed in real world engines.

Aircraft engine manufacturers collect large amount of engine related data during flights. These data are used to detect anomalies in the engines in order to help companies optimize their maintenance costs. This article introduces and studies a generic methodology that allows one to build automatic early signs of anomaly detection in a way that is understandable by human operators who make the final maintenance decision. The main idea of the method is to generate a very large number of binary indicators based on parametric anomaly scores designed by experts, complemented by simple aggregations of those scores. The best indicators are selected via a classical forward scheme, leading to a much reduced number of indicators that are tuned to a data set. We illustrate the interest of the method on simulated data which contain realistic early signs of anomalies.